Stem-loop chi-mir-134

Accession

MI0030621

Description

Capra hircus chi-mir-134 precursor miRNA

Literature search

26 open access papers mention chi-mir-134
(51 sentences)

Sequence

622 reads, 2.0 reads per million, 36 experiments

uggugucagcaccguucagggugUGUGACUGGUUGACCAGAGGGGcaagcacuccguucacccUCUGGGCUGCCUCGUCACCAACccucagcaccaaccgcaccugcc
.(((((.......(((.(((((..(((((.(((...((((((((...(((.....)))..))))))))...)))..)))))..))))).))).......)))))....

Structure

---u     cagcacc   c     gU     -U   UGA        Gca   a 
    ggugu       guu agggu  GUGAC  GGU   CCAGAGGG   agc c
    |||||       ||| |||||  |||||  |||   ||||||||   ||| u
    ccacg       cga uccCA  CACUG  CCG   GGUCUccc   uug c
ccgu     ccaacca   c     AC     CU   UCG        -ac   c 

Annotation confidence High

Genome context

chr21: 67131102-67131209 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-134

Mature chi-miR-134-5p

• Accession: MIMAT0035951
• Description: Capra hircus chi-miR-134-5p mature miRNA
• Sequence: 24 - UGUGACUGGUUGACCAGAGGGG - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-134-3p

• Accession: MIMAT0058939
• Description: Capra hircus chi-miR-134-3p mature miRNA
• Sequence: 64 - UCUGGGCUGCCUCGUCACCAAC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40