Stem-loop chi-mir-135b

Accession

MI0030623

Description

Capra hircus chi-mir-135b precursor miRNA

Literature search

30 open access papers mention chi-mir-135b
(105 sentences)

Sequence

2764 reads, 14.0 reads per million, 25 experiments

gcucugcuguggccUAUGGCUUUUCAUUCCUAUGUGauuacuguuccaaacucAUGUAGGGCUAAAAGCCAUGGGuuacagugaggggcgcgcgccuacuccugc
.(((.(((((((((((((((((((...((((((((((..............))))))))))..))))))))))))))))))))))((((....))))........

Structure

-------------------g   u                   CAU          uuacug 
                    cuc gcuguggccUAUGGCUUUU   UCCUAUGUGa      u
                    ||| |||||||||||||||||||   ||||||||||       
                    gag ugacauuGGGUACCGAAAA   GGGAUGUAcu      u
cguccucauccgcgcgcggg   -                   -UC          caaacc 

Annotation confidence High

Genome context

chr16: 2864806-2864910 [-]

Mature chi-miR-135b-5p

• Accession: MIMAT0035953
• Description: Capra hircus chi-miR-135b-5p mature miRNA
• Sequence: 15 - UAUGGCUUUUCAUUCCUAUGUG - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-135b-3p

• Accession: MIMAT0035954
• Description: Capra hircus chi-miR-135b-3p mature miRNA
• Sequence: 54 - AUGUAGGGCUAAAAGCCAUGGG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40