Stem-loop chi-mir-1388

Accession

MI0030626

Description

Capra hircus chi-mir-1388 precursor miRNA

Sequence

ccugggcagugccuucAGGACUGUCCAACCUGAGAAUggugagcauccagggacaAUCUCAGGUUCGUCAGCCCGCAaggugccguucccuc
...((((.(((((((..((.(((.(.(((((((((.((...............)).))))))))).).))).))..))))))).))))....

Structure

-ccu    a       cA  A   U C         A  gugagc 
    gggc gugccuu  GG CUG C AACCUGAGA Ug      a
    |||| |||||||  || ||| | ||||||||| ||      u
    cuug cguggaA  CC GAC G UUGGACUCU ac      c
cucc    c       CG  C   U C         A  agggac 

Annotation confidence Low

Genome context

chr13: 54634082-54634173 [+]

Mature chi-miR-1388-5p

• Accession: MIMAT0035958
• Description: Capra hircus chi-miR-1388-5p mature miRNA
• Sequence: 17 - AGGACUGUCCAACCUGAGAAU - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1388-3p

• Accession: MIMAT0035959
• Description: Capra hircus chi-miR-1388-3p mature miRNA
• Sequence: 56 - AUCUCAGGUUCGUCAGCCCGCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40