Stem-loop chi-mir-140

Accession

MI0030627

Description

Capra hircus chi-mir-140 precursor miRNA

Literature search

44 open access papers mention chi-mir-140
(183 sentences)

Sequence

772052 reads, 2374.0 reads per million, 36 experiments

ugugugucugucucucuguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuACCACAGGGUAGAACCACGGACaggauaccggggcacccucugcaucg
((((.(..((((((...((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))..).).)))...

Structure

---   - u uc      ucu        -  A             A       u  c  c 
   ugu g g  ugucuc   guguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
   ||| | |  ||||||   |||||||| || ||||||||||||| ||||||| || || a
   acg c c  acgggg   cauaggaC GG CACCAAGAUGGGA ACCAucu gu cg  
gcu   u u cc      --c        A  -             C       u  -  u 

Annotation confidence High

Genome context

chr18: 40199402-40199515 [+]

Mature chi-miR-140-5p

• Accession: MIMAT0035960
• Description: Capra hircus chi-miR-140-5p mature miRNA
• Sequence: 27 - CAGUGGUUUUACCCUAUGGUAG - 48
• Evidence: experimental ; Illumina [1]

Mature chi-miR-140-3p

• Accession: MIMAT0035961
• Description: Capra hircus chi-miR-140-3p mature miRNA
• Sequence: 67 - ACCACAGGGUAGAACCACGGAC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40