Stem-loop chi-mir-146a

Accession

MI0030633

Description

Capra hircus chi-mir-146a precursor miRNA

Literature search

129 open access papers mention chi-mir-146a
(777 sentences)

Sequence

1912114 reads, 5762.0 reads per million, 36 experiments

ccuauguguauccucagcuuUGAGAACUGAAUUCCAUAGGUUgugucagugucagaCCUGUGAAGUUUAGUUCUUUAGcugggauaucucugucauccu
.......((((((.(((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).)))))))))))............

Structure

-----ccuaugu      u     uU            C        g  uc 
            guaucc cagcu  GAGAACUGAAUU CAUAGGUU ug  a
            |||||| |||||  |||||||||||| |||||||| ||  g
            uauagg gucGA  UUCUUGAUUUGA GUGUCCag ac  u
uccuacugucuc      -     -U            A        -  ug 

Annotation confidence High

Genome context

chr7: 72031491-72031589 [+]

Mature chi-miR-146a-5p

• Accession: MIMAT0035971
• Description: Capra hircus chi-miR-146a-5p mature miRNA
• Sequence: 21 - UGAGAACUGAAUUCCAUAGGUU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-miR-146a-3p

• Accession: MIMAT0058942
• Description: Capra hircus chi-miR-146a-3p mature miRNA
• Sequence: 57 - CCUGUGAAGUUUAGUUCUUUAG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40