Stem-loop chi-mir-146b

Accession

MI0030634

Description

Capra hircus chi-mir-146b precursor miRNA

Literature search

45 open access papers mention chi-mir-146b
(270 sentences)

Sequence

764033 reads, 2285.0 reads per million, 36 experiments

uaagagaacuuuggccaccuggcucUGAGAACUGAAUUCCAUAGGcugugagcucuagcaaaUGCCCUAGGGACUCAGUUCUGGUgcccggcugcgcuacaccaucaau
...((......((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).)))).....))...

Structure

uaa  gaacuu    -  -  u   u  G        A    A    c   ga  u 
   ga      uggc ca cc ggc cU AGAACUGA UUCC UAGG ugu  gc c
   ||      |||| || || ||| || |||||||| |||| |||| |||  ||  
   cu      aucg gu gg ccg GG UCUUGACU AGGG AUCC GUa  cg u
uaa  -accac    c  c  c   U  -        C    -    C   aa  a 

Annotation confidence High

Genome context

chr26: 22970956-22971064 [+]

Mature chi-miR-146b-5p

• Accession: MIMAT0035972
• Description: Capra hircus chi-miR-146b-5p mature miRNA
• Sequence: 26 - UGAGAACUGAAUUCCAUAGG - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-146b-3p

• Accession: MIMAT0035973
• Description: Capra hircus chi-miR-146b-3p mature miRNA
• Sequence: 63 - UGCCCUAGGGACUCAGUUCUGGU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40