Stem-loop chi-mir-148b

Accession

MI0030637

Description

Capra hircus chi-mir-148b precursor miRNA

Literature search

19 open access papers mention chi-mir-148b
(101 sentences)

Sequence

193270 reads, 600.0 reads per million, 36 experiments

aucauuuccagucaccguuagcauuugagguGAAGUUCUGUUAUACACUCAGGCUguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucuagc
................(..(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).)))..)....

Structure

aucauuuccagucacc uu   a                  U  A    CA    guggc 
                g  agc uuugagguGAAGUUCUGU AU CACU  GGCU     u
                |  ||| |||||||||||||||||| || ||||  ||||     c
                c  ucg aagcucUGUUUCAAGACA UA GUGA  CUga     u
------------cgau uu   a                  C  C    --    aaguc 

Annotation confidence High

Genome context

chr5: 26340976-26341084 [-]

Mature chi-miR-148b-5p

• Accession: MIMAT0035978
• Description: Capra hircus chi-miR-148b-5p mature miRNA
• Sequence: 32 - GAAGUUCUGUUAUACACUCAGGCU - 55
• Evidence: experimental ; Illumina [1]

Mature chi-miR-148b-3p

• Accession: MIMAT0035979
• Description: Capra hircus chi-miR-148b-3p mature miRNA
• Sequence: 71 - UCAGUGCAUCACAGAACUUUGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40