Stem-loop chi-mir-153

Accession

MI0030640

Description

Capra hircus chi-mir-153 precursor miRNA

Literature search

21 open access papers mention chi-mir-153
(124 sentences)

Sequence

1206 reads, 4.0 reads per million, 36 experiments

ugucugucuccccucucugucuccucccucuucucucucucucacggcugccagcGUCAUUUUUGUGAUCUGCAGCUaguauucucacuccagUUGCAUAGUCACAAAAGUGAUCacuggcagguguggccgcugca
.........................................(((((.(((((((.((((((((((((((.((((((((((......)))..)))))))..))))))))))))).).))))))).)))))........

Structure

ugucugucuccccucucugucuccucccucuucucucucuc     g       c -             -C       --   au 
                                         ucacg cugccag G UCAUUUUUGUGAU  UGCAGCU  agu  u
                                         ||||| ||||||| | |||||||||||||  |||||||  |||   
                                         ggugu gacgguc C AGUGAAAACACUG  ACGUUga  uca  c
---------------------------------acgucgcc     g       a U             AU       cc   cu 

Annotation confidence High

Genome context

chr2: 111832063-111832199 [-]

Mature chi-miR-153-5p

• Accession: MIMAT0058944
• Description: Capra hircus chi-miR-153-5p mature miRNA
• Sequence: 56 - GUCAUUUUUGUGAUCUGCAGCU - 77
• Evidence: experimental ; Illumina [1]

Mature chi-miR-153-3p

• Accession: MIMAT0035983
• Description: Capra hircus chi-miR-153-3p mature miRNA
• Sequence: 94 - UUGCAUAGUCACAAAAGUGAUC - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40