Stem-loop chi-mir-154a

Accession

MI0030641

Description

Capra hircus chi-mir-154a precursor miRNA

Literature search

5 open access papers mention chi-mir-154a
(8 sentences)

Sequence

733 reads, 2.0 reads per million, 35 experiments

ugcuaaucugcgggacuugaagaUAGGUUAUCCGUGUAGCCUUCgcuuuacuugugacgAAUCAUACACGGUUCACCUACUUuucaguaccaaaucccgccuugg
..((((...((((((.((((((((((((...(((((((...(((((.........).))))...)))))))...))))).))))))).......)))))).))))

Structure

ug    ucu      ------c       -     UAU       GCC    - uuu 
  cuaa   gcggga       uugaaga UAGGU   CCGUGUA   UUCg c   a
  ||||   ||||||       ||||||| |||||   |||||||   |||| |   c
  gguu   cgcccu       gacuuUU AUCCA   GGCACAU   AAgc g   u
--    --c      aaaccau       C     CUU       ACU    a ugu 

Annotation confidence High

Genome context

chr21: 67137564-67137668 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-154a

Mature chi-miR-154a-5p

• Accession: MIMAT0035984
• Description: Capra hircus chi-miR-154a-5p mature miRNA
• Sequence: 24 - UAGGUUAUCCGUGUAGCCUUC - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-154a-3p

• Accession: MIMAT0035985
• Description: Capra hircus chi-miR-154a-3p mature miRNA
• Sequence: 60 - AAUCAUACACGGUUCACCUACUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40