Stem-loop chi-mir-154b

Accession

MI0030642

Description

Capra hircus chi-mir-154b precursor miRNA

Literature search

7 open access papers mention chi-mir-154b
(10 sentences)

Sequence

3314 reads, 10.0 reads per million, 36 experiments

agagauacuuggugguacuugaagAGAGGUCUUCCAUGGUGCAUUCGcuuuauucuuugacgAAUCAUACAUGGUUGACCUUUUUUuagguaucaaaucuggccuugaa
.(((........(((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))))........)))...

Structure

--a   auacuugg                   UU     -   C     - uuua 
   gag        ugguacuugaagAGAGGUC  CCAUG GUG AUUCG c    u
   |||        |||||||||||||||||||  ||||| ||| ||||| |     
   uuc        acuauggauUUUUUUCCAG  GGUAC UAC UAAgc g    u
aag   cggucuaa                   UU     A   -     a uuuc 

Annotation confidence High

Genome context

chr21: 67137892-67138000 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-154b

Mature chi-miR-154b-5p

• Accession: MIMAT0035986
• Description: Capra hircus chi-miR-154b-5p mature miRNA
• Sequence: 25 - AGAGGUCUUCCAUGGUGCAUUCG - 47
• Evidence: experimental ; Illumina [1]

Mature chi-miR-154b-3p

• Accession: MIMAT0035987
• Description: Capra hircus chi-miR-154b-3p mature miRNA
• Sequence: 63 - AAUCAUACAUGGUUGACCUUUUUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40