Stem-loop chi-mir-15b

Accession

MI0030645

Description

Capra hircus chi-mir-15b precursor miRNA

Literature search

45 open access papers mention chi-mir-15b
(77 sentences)

Sequence

29512 reads, 90.0 reads per million, 36 experiments

uugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAUacuacagucaagaugCGAAUCAUUAUUUGCUGCUCUAgaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure

u    --g       gua   U       C  C       A   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAU cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gAU UCGUCGU UA UACUAAG gua ga  u
u    aaa       aaa   C       U  U       C   -  ac 

Annotation confidence High

Genome context

chr1: 109436450-109436547 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-15b

Mature chi-miR-15b-5p

• Accession: MIMAT0035992
• Description: Capra hircus chi-miR-15b-5p mature miRNA
• Sequence: 20 - UAGCAGCACAUCAUGGUUUACAU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-miR-15b-3p

• Accession: MIMAT0035993
• Description: Capra hircus chi-miR-15b-3p mature miRNA
• Sequence: 58 - CGAAUCAUUAUUUGCUGCUCUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40