Stem-loop chi-mir-182

Accession

MI0030653

Description

Capra hircus chi-mir-182 precursor miRNA

Literature search

64 open access papers mention chi-mir-182
(307 sentences)

Sequence

29933 reads, 93.0 reads per million, 36 experiments

gccgccgccugccucccaccauuUUUGGCAAUGGUAGAACUCACacuggugagguaaugggauccggugguucuagacuugccaacuauggugugagggcucag
......(((...(((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).))))))....

Structure

gccgcc   ugc   c      uU       UGG      UCA      ugaggu 
      gcc   cuc caccau  UUGGCAA   UAGAAC   Cacugg      a
      |||   ||| ||||||  |||||||   ||||||   ||||||       
      cgg   gag guggua  aaccguu   aucuug   guggcc      a
--gacu   ---   u      uc       cag      ---      uagggu 

Annotation confidence Not enough data

Genome context

chr4: 96226171-96226274 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-182

Mature chi-miR-182-5p

• Accession: MIMAT0036006
• Description: Capra hircus chi-miR-182-5p mature miRNA
• Sequence: 24 - UUUGGCAAUGGUAGAACUCAC - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40