Stem-loop chi-mir-183

Accession

MI0030654

Description

Capra hircus chi-mir-183 precursor miRNA

Literature search

47 open access papers mention chi-mir-183
(226 sentences)

Sequence

8248 reads, 26.0 reads per million, 35 experiments

ccagagagcgugacuccuguucugugUAUGGCACUGGUAGAAUUCACUgugaacagucucggucagugaauuaccgaagggccauaaacagagcagagacagauccgcga
.......(((.((((((((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))).))..).)))))..

Structure

ccagaga   u  - --  -         g      A  --    GA        --   ac 
       gcg ga c  uc cuguucugu UAUGGC CU  GGUA  AUUCACUg  uga  a
       ||| || |  || ||||||||| |||||| ||  ||||  ||||||||  |||   
       cgc cu g  ag gacgagaca auaccg ga  ccau  uaagugac  gcu  g
-----ag   -  a ac  a         a      g  ag    --        ug   cu 

Annotation confidence Not enough data

Genome context

chr4: 96232544-96232653 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-183

Mature chi-miR-183-5p

• Accession: MIMAT0036007
• Description: Capra hircus chi-miR-183-5p mature miRNA
• Sequence: 27 - UAUGGCACUGGUAGAAUUCACU - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40