miRBase entry: chi-mir-183

Stem-loop chi-mir-183

Accession

MI0030654

Description

Capra hircus chi-mir-183 precursor miRNA

Literature search

4 open access papers mention chi-mir-183
(9 sentences)

Sequence

ccagagagcgugacuccuguucugugUAUGGCACUGGUAGAAUUCACUgugaacagucucggucagugaauuaccgaagggccauaaacagagcagagacagauccgcga
.......(((.((((((((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))).))..).)))))..

Structure

ccagaga   u  - --  -         g      A  --    GA        --   ac 
       gcg ga c  uc cuguucugu UAUGGC CU  GGUA  AUUCACUg  uga  a
       ||| || |  || ||||||||| |||||| ||  ||||  ||||||||  |||   
       cgc cu g  ag gacgagaca auaccg ga  ccau  uaagugac  gcu  g
-----ag   -  a ac  a         a      g  ag    --        ug   cu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr4: 96232544-96232653 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-183

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-183

Accession	MIMAT0036007
Description	Capra hircus chi-miR-183 mature miRNA
Sequence	27 - UAUGGCACUGGUAGAAUUCACU - 48
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40