Stem-loop chi-mir-190b

Accession

MI0030663

Description

Capra hircus chi-mir-190b precursor miRNA

Literature search

5 open access papers mention chi-mir-190b
(16 sentences)

Sequence

2292 reads, 7.0 reads per million, 35 experiments

ugcuucugugUGAUAUGUUUGAUAUUGGGUUGuuuaauuaggaaccaACUAAAUGUCAAACAUAUUCUUacagcaguaggcaa
((((((((((((((((((((((((((.((((((((......))).))))).)))))))))))))))...))).))).))))).

Structure

-     -   -   ---               G     -   aa 
 ugcuu cug ugU   GAUAUGUUUGAUAUU GGUUG uuu  u
 ||||| ||| |||   ||||||||||||||| ||||| |||   
 acgga gac aca   UUAUACAAACUGUAA UCAac aag  u
a     u   g   UUC               A     c   ga 

Annotation confidence Medium

Genome context

chr3: 17025879-17025961 [+]

Mature chi-miR-190b-5p

• Accession: MIMAT0036021
• Description: Capra hircus chi-miR-190b-5p mature miRNA
• Sequence: 11 - UGAUAUGUUUGAUAUUGGGUUG - 32
• Evidence: experimental ; Illumina [1]

Mature chi-miR-190b-3p

• Accession: MIMAT0058945
• Description: Capra hircus chi-miR-190b-3p mature miRNA
• Sequence: 48 - ACUAAAUGUCAAACAUAUUCUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40