Stem-loop chi-mir-192

Accession

MI0030665

Description

Capra hircus chi-mir-192 precursor miRNA

Literature search

30 open access papers mention chi-mir-192
(74 sentences)

Sequence

7949168 reads, 24746.0 reads per million, 36 experiments

cgagugcacagggcuCUGACCUAUGAAUUGACAGCCagugcucucguguccccucuggCUGCCAAUUCCAUAGGUCACAGguauguucgccucaaugccagccacca
.(((.(((((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).)))..)))))..............

Structure

-------------c   u  --   g g  C         -     A       ugcucuc 
              gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       g
              ||| ||  ||| | || ||||||||| ||||| |||||||        
              cuc cg  ugu u GA ACUGGAUAC UUAAC GUCgguc       u
accaccgaccguaa   -  cu   a g  C         C     C       uccccug 

Annotation confidence High

Genome context

chr29: 44792471-44792577 [-]

Mature chi-miR-192-5p

• Accession: MIMAT0036024
• Description: Capra hircus chi-miR-192-5p mature miRNA
• Sequence: 16 - CUGACCUAUGAAUUGACAGCC - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-192-3p

• Accession: MIMAT0036025
• Description: Capra hircus chi-miR-192-3p mature miRNA
• Sequence: 59 - CUGCCAAUUCCAUAGGUCACAG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40