Stem-loop chi-mir-196a

Accession

MI0030671

Description

Capra hircus chi-mir-196a precursor miRNA

Literature search

36 open access papers mention chi-mir-196a
(106 sentences)

Sequence

26833 reads, 89.0 reads per million, 36 experiments

ugaacuggaacugcugagugaauUAGGUAGUUUCAUGUUGUUGGgccuggauuucugaacaCAACGACAUUAAACCACCCGAcucacggcaguuacugcucc
......(((((((((..((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).))))))))))).)).....

Structure

ugaacu  -       ga    a  A   A    C         - gc ugg 
      gg aacugcu  guga uU GGU GUUU AUGUUGUUG G  c   a
      || |||||||  |||| || ||| |||| ||||||||| |  |   u
      uc uugacgg  cacu AG CCA CAAA UACAGCAAC c  g   u
-ccucg  a       --    c  C   C    U         a aa ucu 

Annotation confidence High

Genome context

chr19: 38976510-38976611 [+]

Mature chi-miR-196a-5p

• Accession: MIMAT0036032
• Description: Capra hircus chi-miR-196a-5p mature miRNA
• Sequence: 24 - UAGGUAGUUUCAUGUUGUUGG - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-196a-3p

• Accession: MIMAT0058947
• Description: Capra hircus chi-miR-196a-3p mature miRNA
• Sequence: 62 - CAACGACAUUAAACCACCCGA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40