Stem-loop chi-mir-196b

Accession

MI0030672

Description

Capra hircus chi-mir-196b precursor miRNA

Literature search

20 open access papers mention chi-mir-196b
(116 sentences)

Sequence

50725 reads, 171.0 reads per million, 36 experiments

aacuggucggugauuUAGGUAGUUUCCUGUUGUUGGgauccaccuuucucUCGACAGCACGACACUGCCUUCAUuacuucaguug
((((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))).

Structure

-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGga    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauUA  UCCGUCA AG ACGACAGCUcu    c
g      --      CU       C  C           cuuu 

Annotation confidence High

Genome context

chr4: 70532571-70532655 [+]

Mature chi-miR-196b-5p

• Accession: MIMAT0036033
• Description: Capra hircus chi-miR-196b-5p mature miRNA
• Sequence: 16 - UAGGUAGUUUCCUGUUGUUGG - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-196b-3p

• Accession: MIMAT0058948
• Description: Capra hircus chi-miR-196b-3p mature miRNA
• Sequence: 51 - UCGACAGCACGACACUGCCUUCAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40