Stem-loop chi-mir-202

Accession

MI0030682

Description

Capra hircus chi-mir-202 precursor miRNA

Literature search

18 open access papers mention chi-mir-202
(73 sentences)

Sequence

1254 reads, 4.0 reads per million, 36 experiments

gccacucgcuguuccuuuUUCCUAUGCAUAUACUUCUUUgagggucuggccuaAAGAGGUGUAGGGCAUGGGAAaauggggccccgagguuccccugc
....((((..(((((.(((((((((((.(((((((((((.(((......))))))))))))))..))))))))))).)))))..))))..........

Structure

------gcca    cu     u           -A           g   gu 
          cucg  guucc uuUUCCUAUGC  UAUACUUCUUU agg  c
          ||||  ||||| |||||||||||  ||||||||||| |||   
          gagc  cgggg aaAAGGGUACG  AUGUGGAGAAa ucc  u
cguccccuug    cc     u           GG           -   gg 

Annotation confidence Medium

Genome context

chr26: 52891745-52891842 [-]

Mature chi-miR-202-5p

• Accession: MIMAT0036048
• Description: Capra hircus chi-miR-202-5p mature miRNA
• Sequence: 19 - UUCCUAUGCAUAUACUUCUUU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-202-3p

• Accession: MIMAT0036049
• Description: Capra hircus chi-miR-202-3p mature miRNA
• Sequence: 54 - AAGAGGUGUAGGGCAUGGGAA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40