Stem-loop chi-mir-208b

Accession

MI0030685

Description

Capra hircus chi-mir-208b precursor miRNA

Literature search

10 open access papers mention chi-mir-208b
(18 sentences)

Sequence

1044061 reads, 2863.0 reads per million, 36 experiments

ccccaccuccuucuccucucagggAAGCUUUUUGCUCGCGUUAUGUUucucauccgaaUAUAAGACGAACAAAAGGUUUGucugagggcagagugcacccaccugggg
(((((......(((.((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).)))))))).)))(((....))).)))))

Structure

     -----ccuccu   c        g          C   CG        cu 
cccca           ucu cucucagg AAGCUUUUUG UCG  UUAUGUUu  c
|||||           ||| |||||||| |||||||||| |||  ||||||||  a
ggggu           aga gggagucu UUUGGAAAAC AGC  AAUAUaag  u
     ccacccacgug   c        G          A   AG        cc 

Annotation confidence High

Genome context

chr10: 22160120-22160227 [+]

Mature chi-miR-208b-5p

• Accession: MIMAT0058953
• Description: Capra hircus chi-miR-208b-5p mature miRNA
• Sequence: 25 - AAGCUUUUUGCUCGCGUUAUGUU - 47
• Evidence: experimental ; Illumina [1]

Mature chi-miR-208b-3p

• Accession: MIMAT0036053
• Description: Capra hircus chi-miR-208b-3p mature miRNA
• Sequence: 59 - UAUAAGACGAACAAAAGGUUUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40