Stem-loop chi-mir-214

Accession

MI0030689

Description

Capra hircus chi-mir-214 precursor miRNA

Literature search

4 open access papers mention chi-mir-214
(10 sentences)

Sequence

ggccuggcuggacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccgcucaccugUACAGCAGGCACAGACAGGCagucacaugacaacccagccuga
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).)))))))))))))))))...

Structure

ggccu      acgga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac gaCGGACAGA   GGACGACAUguc     g
--agu      -----           u          CAC            cacuc 

Annotation confidence Low

Genome context

chr16: 39501613-39501724 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-214

Mature chi-miR-214-5p

• Accession: MIMAT0036058
• Description: Capra hircus chi-miR-214-5p mature miRNA
• Sequence: 30 - UGCCUGUCUACACUUGCUGUGC - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-214-3p

• Accession: MIMAT0036059
• Description: Capra hircus chi-miR-214-3p mature miRNA
• Sequence: 70 - UACAGCAGGCACAGACAGGC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40