Stem-loop chi-mir-21

Accession

MI0030691

Description

Capra hircus chi-mir-21 precursor miRNA

Literature search

17 open access papers mention chi-mir-21
(71 sentences)

Sequence

uguaccaccuugucgggUAGCUUAUCAGACUGAUGUUGACuguugaaucucauggCAACAGCAGUCGAUGGGCUGUcugacauuuugguauc
.((((((...((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))...)))))).

Structure

u      ccu                A     A     A    u  a 
 guacca   ugucgggUAGCUUAUC GACUG UGUUG Cugu ga  
 ||||||   |||||||||||||||| ||||| ||||| |||| || u
 uauggu   acagucUGUCGGGUAG CUGAC ACAAC ggua cu  
c      uuu                -     G     -    -  c 

Annotation confidence Low

Genome context

chr19: 10841436-10841527 [+]

Mature chi-miR-21-5p

• Accession: MIMAT0036061
• Description: Capra hircus chi-miR-21-5p mature miRNA
• Sequence: 18 - UAGCUUAUCAGACUGAUGUUGAC - 40
• Evidence: experimental ; Illumina [1]

Mature chi-miR-21-3p

• Accession: MIMAT0036062
• Description: Capra hircus chi-miR-21-3p mature miRNA
• Sequence: 56 - CAACAGCAGUCGAUGGGCUGU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40