Stem-loop chi-mir-218

Accession

MI0030694

Description

Capra hircus chi-mir-218 precursor miRNA

Literature search

58 open access papers mention chi-mir-218
(396 sentences)

Sequence

13122 reads, 41.0 reads per million, 36 experiments

gaccagucgccgcggggcuuuccuUUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaaCAUGGUUCUGUCAAGCACCGCGgaaagcaccgcgcucuccugca
...(((....(((((.(((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).))))).....)))..

Structure

gac   -ucgc     g       uUU         CU        gg  gaacg 
   cag     cgcgg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
   |||     ||||| |||||||   |||||||||  ||||||||  ||      
   guc     gcgcc cgaaagG   CACGAACUG  UUGGUACa  gc     u
-ac   cucuc     a       CGC         UC        ag  aaagg 

Annotation confidence High

Genome context

chr20: 583380-583489 [-]

Mature chi-miR-218-5p

• Accession: MIMAT0036066
• Description: Capra hircus chi-miR-218-5p mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGU - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-218-3p

• Accession: MIMAT0058955
• Description: Capra hircus chi-miR-218-3p mature miRNA
• Sequence: 67 - CAUGGUUCUGUCAAGCACCGCG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40