Stem-loop chi-mir-221

Accession

MI0030696

Description

Capra hircus chi-mir-221 precursor miRNA

Literature search

3 open access papers mention chi-mir-221
(3 sentences)

Sequence

ccaacauccaggucuagggcaugaACCUGGCAUACAAUGUAGAUUucuguguuuguugagcaacAGCUACAUUGUCUGCUGGGUUUcaggcuaccuggaaacacguucuu
......(((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))))...........

Structure

-----ccaaca       cuag   a    -       U         AUUu    -    g 
           uccaggu    ggc ugaA CCUGGCA ACAAUGUAG    cugu guuu  
           |||||||    ||| |||| ||||||| |||||||||    |||| |||| u
           aggucca    ucg acUU GGGUCGU UGUUACAUC    GAca cgag  
uucuugcacaa       ----   g    U       C         ----    a    u 

Annotation confidence Not enough data

Genome context

chrX: 93117822-93117931 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-221

Mature chi-miR-221-5p

• Accession: MIMAT0036068
• Description: Capra hircus chi-miR-221-5p mature miRNA
• Sequence: 25 - ACCUGGCAUACAAUGUAGAUU - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-221-3p

• Accession: MIMAT0036069
• Description: Capra hircus chi-miR-221-3p mature miRNA
• Sequence: 65 - AGCUACAUUGUCUGCUGGGUUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40