Stem-loop chi-mir-223

Accession

MI0030698

Description

Capra hircus chi-mir-223 precursor miRNA

Literature search

99 open access papers mention chi-mir-223
(444 sentences)

Sequence

73767 reads, 225.0 reads per million, 36 experiments

ccagccuucugcagugccaugcucUGUGUAUUUGACAAGCUGAGUUGGacacuccauguaguagUGUCAGUUUGUCAAAUACCCCaagugcggcauaugccuagcag
...((.....((((((((.((((..(.((((((((((((((((.....((((.....)).))....)))))))))))))))).)..)))).))))).)))...))..

Structure

cca  cuucu   -     a    cU U                GUUGG  -  u 
   gc     gca gugcc ugcu  G GUAUUUGACAAGCUGA     ac ac c
   ||     ||| ||||| ||||  | ||||||||||||||||     || || c
   cg     cgu uacgg guga  C CAUAAACUGUUUGACU     ug ug a
-ga  --auc   a     c    aC C                -GUga  a  u 

Annotation confidence High

Genome context

chrX: 88490300-88490406 [+]

Mature chi-miR-223-5p

• Accession: MIMAT0036071
• Description: Capra hircus chi-miR-223-5p mature miRNA
• Sequence: 25 - UGUGUAUUUGACAAGCUGAGUUGG - 48
• Evidence: experimental ; Illumina [1]

Mature chi-miR-223-3p

• Accession: MIMAT0036072
• Description: Capra hircus chi-miR-223-3p mature miRNA
• Sequence: 65 - UGUCAGUUUGUCAAAUACCCC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40