Stem-loop chi-mir-27a

Accession

MI0030722

Description

Capra hircus chi-mir-27a precursor miRNA

Literature search

10 open access papers mention chi-mir-27a
(32 sentences)

Sequence

uggccuggggagcAGGGCUUAGCUGCUUGUGAGCAgguccacaucaagucgugUUCACAGUGGCUAAGUUCCGcccccccggg
...(((((((.((.(((((((((((((.(((((((.(.(........).).)))))))))))))))))))).))..)))))))

Structure

ugg       -a  A             U       g u cac 
   ccugggg  gc GGGCUUAGCUGCU GUGAGCA g c   a
   |||||||  || ||||||||||||| ||||||| | |    
   gggcccc  cG CUUGAAUCGGUGA CACUUgu c g   u
---       cc  C             -       g u aac 

Annotation confidence Low

Genome context

chr7: 10075498-10075580 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-27a

Mature chi-miR-27a-5p

• Accession: MIMAT0036105
• Description: Capra hircus chi-miR-27a-5p mature miRNA
• Sequence: 14 - AGGGCUUAGCUGCUUGUGAGCA - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-27a-3p

• Accession: MIMAT0036106
• Description: Capra hircus chi-miR-27a-3p mature miRNA
• Sequence: 54 - UUCACAGUGGCUAAGUUCCG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40