Stem-loop chi-mir-27b

Accession

MI0030723

Description

Capra hircus chi-mir-27b precursor miRNA

Literature search

10 open access papers mention chi-mir-27b
(85 sentences)

Sequence

gcgacgaccucucugacgaggugcAGAGCUUAGCUGAUUGGUGAACagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaagguga
......((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).))))..

Structure

gcgacg    -    gacg                 G    G       ugac   u 
      accu cucu    aggugcAGAGCUUAGCU AUUG UGAACag    ugg  
      |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
      ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
----ag    a    --ag                 -    -       --uc   u 

Annotation confidence Not enough data

Genome context

chr8: 82818815-82818918 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-27b

Mature chi-miR-27b-5p

• Accession: MIMAT0036107
• Description: Capra hircus chi-miR-27b-5p mature miRNA
• Sequence: 25 - AGAGCUUAGCUGAUUGGUGAAC - 46
• Evidence: experimental ; Illumina [1]

Mature chi-miR-27b-3p

• Accession: MIMAT0036108
• Description: Capra hircus chi-miR-27b-3p mature miRNA
• Sequence: 67 - UUCACAGUGGCUAAGUUCUGC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40