Stem-loop chi-mir-28

Accession

MI0030724

Description

Capra hircus chi-mir-28 precursor miRNA

Literature search

8 open access papers mention chi-mir-28
(65 sentences)

Sequence

1195241 reads, 3691.0 reads per million, 36 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGUugccuuucugacuuuccCACUAGAUUGAGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((.(((((((.((((((........))))....)).))))))).)))))))).))))))))).)))

Structure

   c         A        A       U  ----    gcc 
ggu cuugcccuc AGGAGCUC CAGUCUA UG    AGUu   u
||| ||||||||| |||||||| ||||||| ||    ||||    
uca ggacgggAG UCCUCGAG GUUAGAU AC    ucag   u
   c         G        A       C  ccuu    ucu 

Annotation confidence High

Genome context

chr1: 80630274-80630359 [-]

Mature chi-miR-28-5p

• Accession: MIMAT0036109
• Description: Capra hircus chi-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAGU - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-28-3p

• Accession: MIMAT0036110
• Description: Capra hircus chi-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGAGAGCUCCUGGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40