Stem-loop chi-mir-296

Accession

MI0030725

Description

Capra hircus chi-mir-296 precursor miRNA

Literature search

23 open access papers mention chi-mir-296
(109 sentences)

Sequence

9399 reads, 30.0 reads per million, 36 experiments

aggacccuuccgGAGGGCCCCCCCCAAUCCUGUUGugcuugguucagAGGGUUGGGCGGAGGCUUUCCUGaagggucug
.(((((((((.((((((((.(((((((((((.(((.((...)).)))))))))))).)).)))))))).))))))))).

Structure

a         c        C  -         G   u  u 
 ggacccuuc gGAGGGCC CC CCCAAUCCU UUG gc  
 ||||||||| |||||||| || ||||||||| ||| || u
 ucugggaaG CCUUUCGG GG GGGUUGGGA gac ug  
g         U        A  C         -   u  g 

Annotation confidence High

Genome context

chr13: 58649190-58649268 [+]

Mature chi-miR-296-5p

• Accession: MIMAT0058959
• Description: Capra hircus chi-miR-296-5p mature miRNA
• Sequence: 13 - GAGGGCCCCCCCCAAUCCUGUUG - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-296-3p

• Accession: MIMAT0036111
• Description: Capra hircus chi-miR-296-3p mature miRNA
• Sequence: 48 - AGGGUUGGGCGGAGGCUUUCCUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40