Stem-loop chi-mir-29b

Accession

MI0030727

Description

Capra hircus chi-mir-29b precursor miRNA

Literature search

89 open access papers mention chi-mir-29b
(561 sentences)

Sequence

198443 reads, 602.0 reads per million, 36 experiments

cuucuggaagCUGGUUUCACAUGGUGGCUUAGauuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGUUUuaggaguaa
(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))...

Structure

---         -          C      G  U    uuuucc 
   cuucuggaa gCUGGUUUCA AUGGUG CU AGau      a
   ||||||||| |||||||||| |||||| || ||||       
   gaggauUUU UGACUAAAGU UACCAC GA Ucua      u
aau         G          U      -  -    uguuuc 

Annotation confidence Medium

Genome context

chr16: 77238818-77238901 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-29b

Mature chi-miR-29b-5p

• Accession: MIMAT0036114
• Description: Capra hircus chi-miR-29b-5p mature miRNA
• Sequence: 11 - CUGGUUUCACAUGGUGGCUUAG - 32
• Evidence: experimental ; Illumina [1]

Mature chi-miR-29b-3p

• Accession: MIMAT0036115
• Description: Capra hircus chi-miR-29b-3p mature miRNA
• Sequence: 52 - UAGCACCAUUUGAAAUCAGUGUUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40