Stem-loop chi-mir-301a

Accession

MI0030729

Description

Capra hircus chi-mir-301a precursor miRNA

Literature search

1 open access papers mention chi-mir-301a
(1 sentences)

Sequence

acugcuaacgaauGCUCUGACUUUAUUGCACUACuguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCaucugaaagcag
.(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))

Structure

a     aa  a     C    ---U          A  -  acu 
 cugcu  cg auGCU UGAC    UUAUUGCACU Cu gu   u
 |||||  || ||||| ||||    |||||||||| || ||    
 gacga  gu uaCGA ACUG    GAUAACGUGA ga cg   u
-     aa  c     A    UUAU          C  u  aca 

Annotation confidence Low

Genome context

chr19: 10147765-10147849 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-301a

Mature chi-miR-301a-5p

• Accession: MIMAT0036118
• Description: Capra hircus chi-miR-301a-5p mature miRNA
• Sequence: 14 - GCUCUGACUUUAUUGCACUAC - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-301a-3p

• Accession: MIMAT0036119
• Description: Capra hircus chi-miR-301a-3p mature miRNA
• Sequence: 51 - CAGUGCAAUAGUAUUGUCAAAGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40