Stem-loop chi-mir-323b

Accession

MI0030739

Description

Capra hircus chi-mir-323b precursor miRNA

Literature search

2 open access papers mention chi-mir-323b
(2 sentences)

Sequence

646 reads, 2.0 reads per million, 36 experiments

gcgugcugCUGCACUUGAUGCUUGAGGAGagguugcccguggcccguucgcauucuucaugucgCACAAUACACGGUCGGCCUCUcuucgguaucaaaucccaccuugca
..((((....))))((((((((.((((((((((((.(((((....((.(((((.....))).)).))....))))).)))))))))))))))))))).............

Structure

gcgugcugCUGCAC        U            c     gccc  u  -   u 
              UUGAUGCU GAGGAGagguug ccgug    gu cg cau c
              |||||||| |||||||||||| |||||    || || ||| u
              aacuaugg cuucUCUCCGGC GGCAC    CA gc gua u
-acguuccacccua        -            U     AUAA  C  u   c 

Annotation confidence Low

Genome context

chr21: 67144000-67144109 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from chi-mir-323b

Mature chi-miR-323b-5p

• Accession: MIMAT0058962
• Description: Capra hircus chi-miR-323b-5p mature miRNA
• Sequence: 9 - CUGCACUUGAUGCUUGAGGAG - 29
• Evidence: experimental ; Illumina [1]

Mature chi-miR-323b-3p

• Accession: MIMAT0036134
• Description: Capra hircus chi-miR-323b-3p mature miRNA
• Sequence: 65 - CACAAUACACGGUCGGCCUCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40