Stem-loop chi-mir-328

Accession

MI0030742

Description

Capra hircus chi-mir-328 precursor miRNA

Literature search

15 open access papers mention chi-mir-328
(59 sentences)

Sequence

23448 reads, 71.0 reads per million, 36 experiments

cuguuucggagccuggagcgGGGGGGCAGGAGGGGCUCAGGGAgauagugugugcugcccCUGGCCCUCUCUGCCCUUCCGUcccccguuccug
.......(((((..((.(((((((((((((.(((((.(((((.(.((((....))))))))))))))).))))))))))))).))..)))))..

Structure

cuguuuc     cu  a             A     U     A a    g 
       ggagc  gg gcgGGGGGGCAGG GGGGC CAGGG g uagu u
       |||||  || ||||||||||||| ||||| ||||| | ||||  
       ccuug  cc UGCCUUCCCGUCU UCCCG GUCcc c gucg g
-----gu     cc  c             C     -     - -    u 

Annotation confidence Medium

Genome context

chr18: 38015786-38015879 [-]

Mature chi-miR-328-5p

• Accession: MIMAT0058963
• Description: Capra hircus chi-miR-328-5p mature miRNA
• Sequence: 21 - GGGGGGCAGGAGGGGCUCAGGGA - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-328-3p

• Accession: MIMAT0036139
• Description: Capra hircus chi-miR-328-3p mature miRNA
• Sequence: 61 - CUGGCCCUCUCUGCCCUUCCGU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40