Stem-loop chi-mir-330

Accession

MI0030745

Description

Capra hircus chi-mir-330 precursor miRNA

Literature search

13 open access papers mention chi-mir-330
(95 sentences)

Sequence

8424 reads, 26.0 reads per million, 36 experiments

ucgugcugugugaucuuuggcgaucacugccUCUCUGGGCCUGUGUCUUAGGCUcugcaagaucaaccgagCAAAGCACACGGCCUGCAGAGAGGcagcgcuccgcuc
..(((((..((((((......)))))).(((((((((((((((((.(((..((((.............)))).))))))).))))..)))))))))))))).......

Structure

-----uc     gugugaucuuuggcgaucacu         --    -    U   AG    ugcaa 
       gugcu                     gccUCUCUG  GGCC UGUG CUU  GCUc     g
       |||||                     |||||||||  |||| |||| |||  ||||     a
       cgcga                     cGGAGAGAC  CCGG ACAC GAA  Cgag     u
cucgccu     ---------------------         GU    C    -   -A    ccaac 

Annotation confidence Medium

Genome context

chr18: 57497414-57497521 [-]

Mature chi-miR-330-5p

• Accession: MIMAT0036143
• Description: Capra hircus chi-miR-330-5p mature miRNA
• Sequence: 32 - UCUCUGGGCCUGUGUCUUAGGCU - 54
• Evidence: experimental ; Illumina [1]

Mature chi-miR-330-3p

• Accession: MIMAT0036144
• Description: Capra hircus chi-miR-330-3p mature miRNA
• Sequence: 72 - CAAAGCACACGGCCUGCAGAGAGG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40