Stem-loop chi-mir-335

Accession

MI0030747

Description

Capra hircus chi-mir-335 precursor miRNA

Literature search

2 open access papers mention chi-mir-335
(6 sentences)

Sequence

cuuuugggcgggggUCAAGAGCAAUAACGAAAAAUguuugucauaaaccgUUUUUCAUUAUUGCUCCUGACCuccucucauuugcuguauuc
....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))))............

Structure

--------cuuu    c        A         C        u  gu 
            uggg gggggUCA GAGCAAUAA GAAAAAUg uu  c
            |||| |||||||| ||||||||| |||||||| ||   
            acuc ccuCCAGU CUCGUUAUU CUUUUUgc aa  a
cuuaugucguuu    u        C         A        c  au 

Annotation confidence Low

Genome context

chr4: 96880780-96880871 [+]

Mature chi-miR-335-5p

• Accession: MIMAT0036147
• Description: Capra hircus chi-miR-335-5p mature miRNA
• Sequence: 15 - UCAAGAGCAAUAACGAAAAAU - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-335-3p

• Accession: MIMAT0036148
• Description: Capra hircus chi-miR-335-3p mature miRNA
• Sequence: 51 - UUUUUCAUUAUUGCUCCUGACC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40