Stem-loop chi-mir-338

Accession

MI0030748

Description

Capra hircus chi-mir-338 precursor miRNA

Sequence

gcacgggccguccuccccAACAAUAUCCUGGUGCUGAGUgaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUgaagagggcagcugcca
(((...((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))))..

Structure

--   cgg  c      cc      U   -         -   ga  a 
  gca   gc guccuc  cAACAA AUC CUGGUGCUG AGU  ug c
  |||   || ||||||  |||||| ||| ||||||||| |||  || a
  cgu   cg cgggag  gUUGUU UAG GACUACGAC Uca  gc c
ac   ---  a      aa      U   U         C   ac  a 

Annotation confidence Low

Genome context

chr19: 53446002-53446093 [+]

Mature chi-miR-338-5p

• Accession: MIMAT0036149
• Description: Capra hircus chi-miR-338-5p mature miRNA
• Sequence: 19 - AACAAUAUCCUGGUGCUGAGU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-338-3p

• Accession: MIMAT0036150
• Description: Capra hircus chi-miR-338-3p mature miRNA
• Sequence: 55 - UCCAGCAUCAGUGAUUUUGUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40