Stem-loop chi-mir-338

Accession

MI0030748

Description

Capra hircus chi-mir-338 precursor miRNA

Literature search

26 open access papers mention chi-mir-338
(155 sentences)

Sequence

22258 reads, 68.0 reads per million, 36 experiments

gcacgggccguccuccccAACAAUAUCCUGGUGCUGAGUgaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUgaagagggcagcugcca
(((...((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))))..

Structure

--   cgg  c      cc      U   -         -   ga  a 
  gca   gc guccuc  cAACAA AUC CUGGUGCUG AGU  ug c
  |||   || ||||||  |||||| ||| ||||||||| |||  || a
  cgu   cg cgggag  gUUGUU UAG GACUACGAC Uca  gc c
ac   ---  a      aa      U   U         C   ac  a 

Annotation confidence High

Genome context

chr19: 53446002-53446093 [+]

Mature chi-miR-338-5p

• Accession: MIMAT0036149
• Description: Capra hircus chi-miR-338-5p mature miRNA
• Sequence: 19 - AACAAUAUCCUGGUGCUGAGU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-338-3p

• Accession: MIMAT0036150
• Description: Capra hircus chi-miR-338-3p mature miRNA
• Sequence: 55 - UCCAGCAUCAGUGAUUUUGUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40