Stem-loop chi-mir-33a

Accession

MI0030749

Description

Capra hircus chi-mir-33a precursor miRNA

Literature search

15 open access papers mention chi-mir-33a
(57 sentences)

Sequence

4202 reads, 13.0 reads per million, 36 experiments

ugcugcgGUGCAUUGUAGUUGCAUUGCAUGuuccggcggcaccgugCAAUGUUUCCACAGUGCAUCAcagaggccug
..(((.((((((((((.(..((((((((((.(((...)).).))))))))))..).)))))))))).))).......

Structure

-----ug   c          A UU          u -  g 
       cug gGUGCAUUGU G  GCAUUGCAUG u cc  
       ||| |||||||||| |  |||||||||| | || g
       gac CUACGUGACA C  UGUAACgugc a gg  
guccgga   A          C UU          c c  c 

Annotation confidence High

Genome context

chr5: 114359915-114359991 [+]

Mature chi-miR-33a-5p

• Accession: MIMAT0036151
• Description: Capra hircus chi-miR-33a-5p mature miRNA
• Sequence: 8 - GUGCAUUGUAGUUGCAUUGCAUG - 30
• Evidence: experimental ; Illumina [1]

Mature chi-miR-33a-3p

• Accession: MIMAT0036152
• Description: Capra hircus chi-miR-33a-3p mature miRNA
• Sequence: 47 - CAAUGUUUCCACAGUGCAUCA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40