Stem-loop chi-mir-33b

Accession

MI0030750

Description

Capra hircus chi-mir-33b precursor miRNA

Literature search

2 open access papers mention chi-mir-33b
(3 sentences)

Sequence

gcgggcggccccgcgGUGCAUUGCUGUUGCAUUGcaugugugaggcaggugCAGUGCCUCGGCAGUGCAGCCcggagccggccccuggcaccgc
((((.((((.(((.((((((((((((..(((((((((.(((...))).)))))))))..)))))))))).))))).))))(((...))).))))

Structure

    ---------g    c   c  -          UU         g   g 
gcgg          cggc ccg gG UGCAUUGCUG  GCAUUGcau ugu  
||||          |||| ||| || ||||||||||  ||||||||| ||| a
cgcc          gccg ggc CC ACGUGACGGC  CGUGACgug acg  
    acgguccccg    a   -  G          UC         g   g 

Annotation confidence Low

Genome context

chr19: 35556884-35556977 [+]

Mature chi-miR-33b-5p

• Accession: MIMAT0036153
• Description: Capra hircus chi-miR-33b-5p mature miRNA
• Sequence: 16 - GUGCAUUGCUGUUGCAUUG - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-33b-3p

• Accession: MIMAT0036154
• Description: Capra hircus chi-miR-33b-3p mature miRNA
• Sequence: 52 - CAGUGCCUCGGCAGUGCAGCC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40