Stem-loop chi-mir-342

Accession

MI0030752

Description

Capra hircus chi-mir-342 precursor miRNA

Literature search

24 open access papers mention chi-mir-342
(118 sentences)

Sequence

420558 reads, 1293.0 reads per million, 36 experiments

cgaggcgAGGGGUGCUAUCUGUGGUUGAGgacacggcaaauggaacugUCUCACACAGAAAUCGCACCCAUcuccucggccc
(((((.((.((((((..((((((..((((.(((.(..........))))))))))))))....)))))).)).)))))....

Structure

----     c  G      --UA      GU    g   c gcaa 
    cgagg gA GGGUGC    UCUGUG  UGAG aca g    a
    ||||| || ||||||    ||||||  |||| ||| |     
    gcucc cU CCCACG    AGACAC  ACUC Ugu c    u
cccg     u  A      CUAA      --    -   - aagg 

Annotation confidence High

Genome context

chr21: 66158564-66158645 [+]

Mature chi-miR-342-5p

• Accession: MIMAT0036157
• Description: Capra hircus chi-miR-342-5p mature miRNA
• Sequence: 8 - AGGGGUGCUAUCUGUGGUUGAG - 29
• Evidence: experimental ; Illumina [1]

Mature chi-miR-342-3p

• Accession: MIMAT0036158
• Description: Capra hircus chi-miR-342-3p mature miRNA
• Sequence: 49 - UCUCACACAGAAAUCGCACCCAU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40