Stem-loop chi-mir-345

Accession

MI0030755

Description

Capra hircus chi-mir-345 precursor miRNA

Literature search

12 open access papers mention chi-mir-345
(75 sentences)

Sequence

25451 reads, 78.0 reads per million, 36 experiments

gagacccaaacccaggucuGCUGACUCCUAGUCCAGUGCUUGugauggcuggugggCCCUGAACUAGGGGUCUGGAGgccuggguuugaauaucaccagcc
((....(((((((((((((.(.((((((((((.(((.((((((........)))))).))).)))))))))).).)))))))))))))....)).......

Structure

-------  gacc             G U          C   U      gau 
       ga    caaacccaggucu C GACUCCUAGU CAG GCUUGu   g
       ||    ||||||||||||| | |||||||||| ||| ||||||    
       cu    guuuggguccgGA G CUGGGGAUCA GUC Cgggug   g
ccgacca  auaa             G U          A   C      guc 

Annotation confidence High

Genome context

chr21: 66338630-66338730 [+]

Mature chi-miR-345-5p

• Accession: MIMAT0036163
• Description: Capra hircus chi-miR-345-5p mature miRNA
• Sequence: 20 - GCUGACUCCUAGUCCAGUGCUUG - 42
• Evidence: experimental ; Illumina [1]

Mature chi-miR-345-3p

• Accession: MIMAT0036164
• Description: Capra hircus chi-miR-345-3p mature miRNA
• Sequence: 57 - CCCUGAACUAGGGGUCUGGAG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40