Stem-loop chi-mir-34b

Accession

MI0030758

Description

Capra hircus chi-mir-34b precursor miRNA

Literature search

5 open access papers mention chi-mir-34b
(7 sentences)

Sequence

gcccggugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUacucucaugcuuacAAUCACUAGUUCCACUGCCAUCaaaacaaggcacagcaucacccgccgccc
((...(((((..((((...(((((((.((((((.((((((((..(....)..)))))))))))))).)))))))....))))..))))).))..............

Structure

--------------  ccg     cg    -guA       U      C        cu u 
              gc   gugcu  guuu    GGCAGUG AAUUAG UGAUUGUa  c c
              ||   |||||  ||||    ||||||| |||||| ||||||||  |  
              cg   cacgg  caaa    CCGUCAC UUGAUC ACUAAcau  g a
cccgccgcccacua  --a     aa    aCUA       C      -        uc u 

Annotation confidence Low

Genome context

chr15: 21772625-21772730 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-34b

Mature chi-miR-34b-5p

• Accession: MIMAT0036167
• Description: Capra hircus chi-miR-34b-5p mature miRNA
• Sequence: 19 - AGGCAGUGUAAUUAGCUGAUUGU - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-34b-3p

• Accession: MIMAT0036168
• Description: Capra hircus chi-miR-34b-3p mature miRNA
• Sequence: 56 - AAUCACUAGUUCCACUGCCAUC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40