Stem-loop chi-mir-34c

Accession

MI0030759

Description

Capra hircus chi-mir-34c precursor miRNA

Literature search

5 open access papers mention chi-mir-34c
(8 sentences)

Sequence

ugagucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaauaccAAUCACUAACCACACGGCCAGGuaaaaagauuugggaauucauccaaaugagcug
.((((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))).(((.....)))..........

Structure

---------------------u      ag     A   A    A     C      C  a 
                      gagucu  uuacu GGC GUGU GUUAG UGAUUG ua u
                      ||||||  ||||| ||| |||| ||||| |||||| ||  
                      uuuaga  aauGG CCG CACA CAAUC ACUAAc au a
gucgaguaaaccuacuuaaggg      aa     A   G    C     -      c  a 

Annotation confidence Not enough data

Genome context

chr15: 21773345-21773446 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-34c

Mature chi-miR-34c-5p

• Accession: MIMAT0036169
• Description: Capra hircus chi-miR-34c-5p mature miRNA
• Sequence: 15 - AGGCAGUGUAGUUAGCUGAUUGC - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-34c-3p

• Accession: MIMAT0036170
• Description: Capra hircus chi-miR-34c-3p mature miRNA
• Sequence: 48 - AAUCACUAACCACACGGCCAGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40