Stem-loop chi-mir-376a

Accession

MI0030767

Description

Capra hircus chi-mir-376a precursor miRNA

Literature search

14 open access papers mention chi-mir-376a
(71 sentences)

Sequence

11694 reads, 37.0 reads per million, 36 experiments

uccuggacagaauccuucuuugguauuuaaaagGUAGAUUCUCCUUCUAUGAGUacauuauuuacgauuaAUCAUAGAGGAAAAUCCAcguuuucaguaucaaaugcugcuugga
(((.((.(((........(((((((((.((((.((.((((.((((.((((((....(((......)))...)))))))))).)))).)).)))).)))))))))..))))).)))

Structure

   u  a   aauccuuc         u    g  A    C    U      GUac   au 
ucc gg cag        uuugguauu aaaa GU GAUU UCCU CUAUGA    auu  u
||| || |||        ||||||||| |||| || |||| |||| ||||||    |||   
agg uc guc        aaacuauga uuuu cA CUAA AGGA GAUACU    uag  u
   u  -   ------gu         c    g  C    A    -      -Aau   ca 

Annotation confidence Medium

Genome context

chr21: 67117973-67118087 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from chi-mir-376a

Mature chi-miR-376a-5p

• Accession: MIMAT0036184
• Description: Capra hircus chi-miR-376a-5p mature miRNA
• Sequence: 34 - GUAGAUUCUCCUUCUAUGAGU - 54
• Evidence: experimental ; Illumina [1]

Mature chi-miR-376a-3p

• Accession: MIMAT0058967
• Description: Capra hircus chi-miR-376a-3p mature miRNA
• Sequence: 71 - AUCAUAGAGGAAAAUCCA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40