Stem-loop chi-mir-378

Accession

MI0030773

Description

Capra hircus chi-mir-378 precursor miRNA

Literature search

7 open access papers mention chi-mir-378
(14 sentences)

Sequence

gcagccagugggugacagagccacccagggCUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcugaguggaaucgccuuccc
.......(.((((((.....((((.((((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))).))))..)))))).)..

Structure

gcagcca u      cagag    c    g  C              U    gu acc 
       g ggguga     ccac cagg CU CUGACUCCAGGUCC GUGU  u   u
       | ||||||     |||| |||| || |||||||||||||| ||||  |    
       c uccgcu     ggug gucC GA GACUGAGGUUCAGG CAcg  a   c
-----cc u      ---aa    a    G  A              U    au aag 

Annotation confidence Low

Genome context

chr7: 60783373-60783482 [+]

Mature chi-miR-378-5p

• Accession: MIMAT0036193
• Description: Capra hircus chi-miR-378-5p mature miRNA
• Sequence: 31 - CUCCUGACUCCAGGUCCUGUGU - 52
• Evidence: experimental ; Illumina [1]

Mature chi-miR-378-3p

• Accession: MIMAT0036194
• Description: Capra hircus chi-miR-378-3p mature miRNA
• Sequence: 69 - ACUGGACUUGGAGUCAGAAGGC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40