Stem-loop chi-mir-380

Accession

MI0030775

Description

Capra hircus chi-mir-380 precursor miRNA

Literature search

2 open access papers mention chi-mir-380
(3 sentences)

Sequence

ccuucccacgguaccugaaaagAUGGUUGACCACAGAACAUGCGCugucucuaugucgUAUGUAAUGUGGUCCACGUCUucucaauaucaaauucagucgcag
.........((((..(((.((((((...(((((((..((((((((.........).)))))))..)))))))..)))))).))).))))..............

Structure

-----ccuucccac    cc   a      GUU       GA       - ugu 
              ggua  uga aagAUG   GACCACA  ACAUGCG C   c
              ||||  ||| ||||||   |||||||  ||||||| |   u
              cuau  acu uUCUGC   CUGGUGU  UGUAUgc g   c
gacgcugacuuaaa    -a   c      -AC       AA       u uau 

Annotation confidence Low

Genome context

chr21: 67103397-67103499 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-380

Mature chi-miR-380-5p

• Accession: MIMAT0036197
• Description: Capra hircus chi-miR-380-5p mature miRNA
• Sequence: 23 - AUGGUUGACCACAGAACAUGCGC - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-380-3p

• Accession: MIMAT0036198
• Description: Capra hircus chi-miR-380-3p mature miRNA
• Sequence: 59 - UAUGUAAUGUGGUCCACGUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40