miRBase entry: chi-mir-381

Stem-loop chi-mir-381

Accession

MI0030776

Description

Capra hircus chi-mir-381 precursor miRNA

Literature search

1 open access papers mention chi-mir-381
(4 sentences)

Sequence

agcgauggaccugcccaaugcuacuacuguuugguacuuaaagcgagguugcccuuuguauauucgguuuuuugacguagaaUAUACAAGGGCAAGCUCUCUGUgaguaucaaaccuuggacccaguc
((((.(((......))).)))).(((..((((((((((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))))))))))..)))........

Structure

agcgauggaccugcccaaugcua   cu            a  c   g        u        --g   u 
                       cua  guuugguacuua ag gag uugcccuu guauauuc   guu u
                       |||  |||||||||||| || ||| |||||||| ||||||||   |||  
                       ggu  caaacuaugagU UC CUC AACGGGAA CAUAUaag   cag u
---------------cugaccca   uc            G  U   G        -        aug   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr21: 67121597-67121724 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from chi-mir-381

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-381

Accession	MIMAT0036199
Description	Capra hircus chi-miR-381 mature miRNA
Sequence	83 - UAUACAAGGGCAAGCUCUCUGU - 104
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40