Stem-loop chi-mir-381

Accession

MI0030776

Description

Capra hircus chi-mir-381 precursor miRNA

Literature search

14 open access papers mention chi-mir-381
(68 sentences)

Sequence

341671 reads, 1070.0 reads per million, 36 experiments

agcgauggaccugcccaaugcuacuacuguuugguacuuaaAGCGAGGUUGCCCUUUGUAUAUUcgguuuuuugacguagaaUAUACAAGGGCAAGCUCUCUGUgaguaucaaaccuuggacccaguc
((((.(((......))).)))).(((..((((((((((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))))))))))..)))........

Structure

agcgauggaccugcccaaugcua   cu            a  C   G        U        --g   u 
                       cua  guuugguacuua AG GAG UUGCCCUU GUAUAUUc   guu u
                       |||  |||||||||||| || ||| |||||||| ||||||||   |||  
                       ggu  caaacuaugagU UC CUC AACGGGAA CAUAUaag   cag u
---------------cugaccca   uc            G  U   G        -        aug   u 

Annotation confidence High

Genome context

chr21: 67121597-67121724 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from chi-mir-381

Mature chi-miR-381-5p

• Accession: MIMAT0058970
• Description: Capra hircus chi-miR-381-5p mature miRNA
• Sequence: 42 - AGCGAGGUUGCCCUUUGUAUAUU - 64
• Evidence: experimental ; Illumina [1]

Mature chi-miR-381-3p

• Accession: MIMAT0036199
• Description: Capra hircus chi-miR-381-3p mature miRNA
• Sequence: 83 - UAUACAAGGGCAAGCUCUCUGU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40