Stem-loop chi-mir-411a

Accession

MI0030784

Description

Capra hircus chi-mir-411a precursor miRNA

Literature search

2 open access papers mention chi-mir-411a
(4 sentences)

Sequence

ccccagccucuguccucggcgucccugugugguacucggagagAUAGUAGACCGUAUAGCGUACgcuuuaucugugacgUAUGUAACACGGUCCACUAACccucaguaucaaauccguccucgaggc
.....(((((.(....(((.......((.(((((((..(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))))))))).)))))....))))))

Structure

cccca     u uccu   cgucccu  g       cg   a A    A      AUA       - uuu 
     gccuc g    cgg       gu ugguacu  gag g UAGU GACCGU   GCGUACg c   a
     ||||| |    |||       || |||||||  ||| | |||| ||||||   ||||||| |   u
     cggag c    gcc       ua acuauga  cuc C AUCA CUGGCA   UGUAUgc g   c
-----     - uccu   -------  a       --   c A    C      CAA       a ugu 

Annotation confidence Low

Genome context

chr21: 67101691-67101817 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from chi-mir-411a

Mature chi-miR-411a-5p

• Accession: MIMAT0036213
• Description: Capra hircus chi-miR-411a-5p mature miRNA
• Sequence: 44 - AUAGUAGACCGUAUAGCGUAC - 64
• Evidence: experimental ; Illumina [1]

Mature chi-miR-411a-3p

• Accession: MIMAT0036214
• Description: Capra hircus chi-miR-411a-3p mature miRNA
• Sequence: 80 - UAUGUAACACGGUCCACUAAC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40