Stem-loop chi-mir-412

Accession

MI0030786

Description

Capra hircus chi-mir-412 precursor miRNA

Literature search

2 open access papers mention chi-mir-412
(3 sentences)

Sequence

agggaagaacgucaguaccagcaaccacucggguacaggacggaUGGUCGACCAGUUGGAAAGUAAUuguuucuaauguACUUCACCUGGUCCACUAGCUguccguacccacugcagccugc
.((..............))...........((((((.((((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).))))))))))))............

Structure

agggaagaacgucaguaccagcaaccacuc      a      a    C      U   AA    -    u 
                              ggguac ggacgg UGGU GACCAG UGG  AGUA AUug u
                              |||||| |||||| |||| |||||| |||  |||| ||||  
                              cccaug ccugUC AUCA CUGGUC ACU  UCAu uaau u
------------------cguccgacguca      -      G    C      C   --    g    c 

Annotation confidence Low

Genome context

chr21: 67142997-67143118 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from chi-mir-412

Mature chi-miR-412-5p

• Accession: MIMAT0036217
• Description: Capra hircus chi-miR-412-5p mature miRNA
• Sequence: 45 - UGGUCGACCAGUUGGAAAGUAAU - 67
• Evidence: experimental ; Illumina [1]

Mature chi-miR-412-3p

• Accession: MIMAT0036218
• Description: Capra hircus chi-miR-412-3p mature miRNA
• Sequence: 80 - ACUUCACCUGGUCCACUAGCU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40