Stem-loop chi-mir-424

Accession

MI0030789

Description

Capra hircus chi-mir-424 precursor miRNA

Literature search

5 open access papers mention chi-mir-424
(17 sentences)

Sequence

ucguugacuccaaggggauaCAGCAGCAAUUCAUGUUUUGAagugcuuuaaacgguuCAAAACGUGAGGCGCUGCUAUacccccuugcgaggaaguaggaagguggggu
.......((((((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).)))..................

Structure

-----------ucguuga   -       a  C      AA             g  cu 
                  cuc caagggg ua AGCAGC  UUCAUGUUUUGAa ug  u
                  ||| ||||||| || ||||||  ||||||||||||| ||  u
                  gag guucccc aU UCGUCG  GAGUGCAAAACuu gc  a
ugggguggaaggaugaag   c       c  A      CG             g  aa 

Annotation confidence Low

Genome context

chrX: 40346458-40346566 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-424

Mature chi-miR-424-5p

• Accession: MIMAT0036222
• Description: Capra hircus chi-miR-424-5p mature miRNA
• Sequence: 21 - CAGCAGCAAUUCAUGUUUUGA - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-424-3p

• Accession: MIMAT0036223
• Description: Capra hircus chi-miR-424-3p mature miRNA
• Sequence: 58 - CAAAACGUGAGGCGCUGCUAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40