miRBase entry: chi-mir-433

Stem-loop chi-mir-433

Accession

MI0030793

Description

Capra hircus chi-mir-433 precursor miRNA

Literature search

1 open access papers mention chi-mir-433
(1 sentences)

Sequence

acccaguggccggggagaaguacggugagccugucauuguucagagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccacaccaugaaggcagccc
.....((.(((..((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...)))))).))).))(((.((..........))..))).

Structure

-------------------accca  g   gg      gua   u           uguucagagaggcua      c   g 
                        gu gcc  ggagaa   cgg gagccugucau               gauccu cuu  
                        || |||  ||||||   ||| |||||||||||               |||||| ||| u
                        cg ugg  ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
cccgacggaaguaccacaccacgg  a   -a      GUG   C           ---------------      a   u

Annotation confidence Not enough data

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Genome context

chr21: 66962261-66962390 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-433

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-433

Accession	MIMAT0036229
Description	Capra hircus chi-miR-433 mature miRNA
Sequence	73 - AUCAUGAUGGGCUCCUCGGUGU - 94
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40