Stem-loop chi-mir-449a

Accession

MI0030794

Description

Capra hircus chi-mir-449a precursor miRNA

Literature search

19 open access papers mention chi-mir-449a
(68 sentences)

Sequence

46673 reads, 138.0 reads per million, 36 experiments

ugugugauggguUGGCAGUGUAUUGUUAGCUGGUUGaauaugugagugccaUCAGCUAACAUGCAACUGCUAUCUuauugcauguaua
.((((((((((.(((((((((((.((((((((((.(.((......)).).)))))))))))))).))))))).)))))))))).....

Structure

----u          u       -    U          U a  au 
     gugugauggg UGGCAGU GUAU GUUAGCUGGU G au  g
     |||||||||| ||||||| |||| |||||||||| | ||   
     uacguuauUC AUCGUCA CGUA CAAUCGACUa c ug  u
auaug          U       A    -          c g  ag 

Annotation confidence High

Genome context

chr20: 24946859-24946946 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-449a

Mature chi-miR-449a-5p

• Accession: MIMAT0036230
• Description: Capra hircus chi-miR-449a-5p mature miRNA
• Sequence: 13 - UGGCAGUGUAUUGUUAGCUGGUUG - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-449a-3p

• Accession: MIMAT0036231
• Description: Capra hircus chi-miR-449a-3p mature miRNA
• Sequence: 52 - UCAGCUAACAUGCAACUGCUAUCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40